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Analysis
of ARISA to
compare
communities.
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PowerPoint
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N.A.
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The
USC Microbial
Observatory -
2003 Poster
Jed
Fuhrman, David
A. Caron, Mark
V. Brown, Peter
D. Countway,
Ximena A.
Hernandez, Ian
Hewson, Xiaolin
Liang, Anand
Patel, Pratik
Savai, Rebecca
Schaffner,
Astrid Schnetzer,
Michael S.
Schwalbach,
Joshua A. Steele
and Mathew
Travao.
Department
of Biological
Sciences and
Wrigley
Institute for
Environmental
Studies,
University of
Southern
California, Los
Angeles.
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PDF
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Here
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Contact
Person :
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dcaron
[at] usc [.] edu
fuhrman
[at] usc [.] edu
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The
USC Microbial
Observatory -
2002 Poster
Jed Fuhrman, David Caron, Mark Brown, Peter Countway, Ian Hewson, Ximena Hernandez, Xiaolin Liang, David J. Patterson, Michael Schwalbach, Astird Schnetzer, Rebecca Schaffner and Matt Travao.
Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles
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Here
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Contact
Person :
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dcaron
[at] usc [.] edu
fuhrman
[at] usc [.] edu
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Tracking
Temporal
Patterns of
Microbial
Biodiversity,
Microdiversity
and Community
Structure at
Various Depths
in the San Pedro
Channel,
California
Mark
V. Brown, Ian
Hewson, and Jed
Fuhrman
Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles
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PDF
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Here
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Person :
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markbrown
[at] tasmail [.] com
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Unicellular
Eukaryotic
Biodiversity in
Environmental
Samples from the
Wester North
Atlantic and
Eastern North
Pacific
D. A. Caron, R.
J. Gast, P. D.
Countway, A.
Schnetzer, D. M.
Moran, M. R.
Dennett and M.
Travao
Department of Biological Sciences, University of Southern California, Los Angeles
Biology
Department,
Woods Hole
Oceanographic
Institution,
Woods Hole
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Person :
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dcaron
[at] usc [.] edu
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A
Molecular
Approach to
Assess the
Impact of
Zooplankton
Grazing
Astrid Schnetzer,
David A. Caron
and Peter D.
Countway
Department of
Biological
Sciences and
Wrigley
Institute of
Environmental
Studies, University of Southern California, Los Angeles
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PDF
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Here
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Person :
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astrids
[at] usc [.] edu
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Tracking
Community
Fingerprints of
Eukaryotic
Marine Microbes
at a Coastal
Time-Series
Station
Countway, P.D.,
Caron, D.A.,
Schnetzer, A.,
Travao, M.J.,
Gast, R.J. and
Dennett, M.R.
Department of Biological Sciences, University of Southern California, Los Angeles
Biology
Department,
Woods Hole
Oceanographic
Institution,
Woods Hole
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PDF
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Person :
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countway
[at] usc [.] edu
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Caron,
D.A. 2000. Symbiosis and mixotrophy
among pelagic microorganisms. In:
Kirchman, D.L. (Ed.), Microbial ecology of the
oceans, John Wiley & Sons, Inc., New York,
pp. 495-523. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Caron,
D.A. 2000. Protistan Herbivory
and Bacterivory. In: Paul, J. (ed.)
Marine Microbiology, vol. 30, Methods in Microbiology,
Academic Press, London, pp. 289-315.
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A., and D.G. Capone. 2001. Nifty nanoplankton.
Nature (London) 412: 593-594
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Abstract:
Click
Here
Link
to paper: Coming
soon |
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Fuhrman,
J.A. 2001. Community structure: Bacteria and
Archaea. In: C.J. Hurst, R.L. Crawford, G.R.
Knudsen, M.J. McInerney, L.D. Stetzenbach, eds.,
Manual of Environmental Microbiology, 2nd edition.
ASM Press, Washington DC, pages 371-377
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Lim,
E.L., M.R. Dennett and D.A. Caron. 2001.
Molecular identification of heterotrophic nanoflagellates
by restriction fragment length polymorphism analysis
of small subunit ribosomal DNA. J. Euk
Microbiol. 48: 247-257
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Gast,
R.J. and D. A. Caron. 2001. Photosymbiotic
associations in planktonic foraminifera and radiolaria.
Hydrobiologia. 461: 1-7
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Abstract:
Click
Here
Link
to paper: Coming soon |
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Caron,
D.A. 2001. Protistan community structure.
In: Hurst, C.J., Knudsen, G.R., McInerney, M.J.,
Stetzenbach, L.D. and M.V. Walter (eds.).
Manual of Environmental Microbiology, Section IV,
ASM Press, Washington, D.C., pp. 378-389
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J. A., J. F. Griffith, and M. S. Schwalbach. 2002.
Prokaryotic and viral diversity patterns in
marine plankton. Ecological Research 17 (2):
183-194 |
Abstract:
Click
Here
Link
to paper: Coming
soon |
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Staley,
J.T. and J.A. Fuhrman. 2002. Microbial Diversity.
In: Encyclopedia of global environmental
change, vol. 2, The Earth system: biological and
ecological dimensions of global environmental
change, H.A. Mooney and J.G. Canadell, editors.
Wiley & Sons, Chichester UK. pp 421-425
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A.2002. Community structure and function
in prokaryotic marine plankton. Antonie
van Leeuwenhoek 81:521-527
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Abstract:
Click
Here
Link
to paper: Coming soon |
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Caron,
D.A. P. Countway, S. Lambert, J. Rose and R. Schaffner.
2002. Protozoa in marine/estuarine waters.
In: Bitton, G. (ed.) Encyclopedia
of environmental microbiology, John Wiley &
Sons, Inc., New York, pp. 2613-2626
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Gonzalez,
J. M., J. S. Covert, W. B. Whitman, J. R. Henriksen,
F. Mayer, B. Scharf, R. Schmitt, A. Buchan, J.
A. Fuhrman, R. P. Kiene and M. A. Moran. 2003.
Silicibacter pomeroyi sp. nov. and Roseovarius
nubinhibens sp. nov.,dimethylsulfoniopropionate-demethylating
bacteria from marine environments. Int. J.
Syst. Evol. Microbiol. 53:1261-1269.
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Abstract:
Click
Here
Link
to paper: Coming soon |
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Fuhrman,
J. 2003. Genome sequences from the sea.
Nature 424: 1001-1002
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Abstract:
Click
Here
Link
to paper: Coming
soon |
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Hewson
I, Vargo GA, Fuhrman JA (2003) Bacterial diversity
in shallow oligotrophic marine benthos and overlying
waters: Effects of virus infection, containment
and nutrient enrichment. Microbial Ecology
46: 322-336
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Abstract:
Click
Here
Link
to paper: Coming soon |
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Caron,
D.A., M.R. Dennett, D.M. Moran, R.A. Schaffner,
D.J. Lonsdale, C.J. Gobler, R. Nuzzi and T.I.
McLean. 2003. Development and application
of a monoclonal antibody technique for counting
Aureococcus anophagefferens, an alga causing recurrent
brown tides in the mid-atlantic United States.
Appl. Environ. Microbiol. 69: 5492-5502.
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Gast,
R.J., D.J. Beaudion and D.A. Caron. 2003.
Isolation of symbiotically expressed genes from
the dinoflagellate symbiont of the solitary radiolarian
Thalassicolla nucleata Biol. Bull. 204:
210-214. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Schwalbach,
M.S., I. Hewson, and J.A. Fuhrman. 2004. Viral
effects on bacterial community composition in
marine plankton mesocosms. Aquatic Microbial
Ecology 34:117-127 |
Abstract:
Click
Here
Pre-print:
PDF
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Hewson
I, Fuhrman JA (2004) Bacterioplankton species
richness and diversity along an estuarine gradient
in Moreton Bay, Australia. Applied and Environmental
Microbiology 70: 3425-3433
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Caron,
D.A., P.D. Countway and M.V. Brown. 2004.
The growing contribution of molecular biology
and immunology to protistan ecology: molecular
signatures as ecological tools. J. Eukaryot.
Microbiol. 51: 38-48.
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Rose,
J.M., D.A. Caron, M.E. Sieracki and N. Poulton.
2004. Counting heterotrophic nanoplanktonic
protists in cultures and in aquatic communities
by flow cytometry. Aquatic Microbial
Ecology. 34: 263-277 |
Abstract:
Click
Here
Link
to paper: Coming soon |
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Michael
S. Schwalbach, Mark Brown and Jed A. Fuhrman.
2005. Impact of light on marine bacterioplankton
community structure. Aquat. Microb. Ecol.39:235-245. |
Abstract:
Click
Here
Pre-print:
PDF
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Mark
V. Brown, Mike S. Schwalbach, Ian Hewson and Jed
A. Fuhrman. 2005. Coupling 16S-ITS
rDNA clone libraries and ARISA to show marine
microbial diversity; development and application
to a time series. Envir. Microbiol. 7:1466-1479.
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Abstract:
Click
Here
Pre-print:
PDF
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Schwalbach, M.S. and J. A. Fuhrman. 2005. Wide-ranging
abundances of Aerobic, Anoxygenic
Phototrophic Bacteria in the world ocean revealed by
epifluorescence
and Quantitative PCR.
Limnol.
Oceanogr. 50:620-628.
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Abstract:
Click
Here
Pre-print:
PDF
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Oremland, R.S., D. G. Capone, J.F.
Stolz,
and J.A. Fuhrman. 2005. Whither or Wither Geomicrobiology in the Era of
“Community Metagenomics”.
Nature Reviews Microbiology 3:572-578
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Abstract:
Click
Here
Pre-print:
PDF
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Brown,
M.V. and J.A. Fuhrman. 2005. Marine bacterial
microdiversity as revealed
by internal transcribed spacer analysis. Aquat. Microb.
Ecol. 41:15-23 |
Abstract: Coming soon
Pre-print:
PDF |
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Hewson, I, and J.A. Fuhrman. 2006. Spatial and vertical biogeography of coral
reef sediment bacterial and diazotroph communities.
Marine Ecology Progress Series 306:79-86 |
Abstract:
Coming soon
Pre-print:
PDF
on request
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Hewson, I, J. A. Steele,
D.G. Capone, J.A. Fuhrman. Temporal and spatial scales of oligotrophic
surface water bacterioplankton assemblage variation.
Mar. Ecol. Ecol. Ser. In Press
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Abstract:
Coming soon
Link to paper: Coming soon
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Hewson, I., and J. A. Fuhrman.
2006. Improved strategy for comparing community
fingerprints.
Microbial
Ecology.
(Feb 06) online 10.1007/s00248-005-0144-9 |
Abstract:
Coming soon
Pre-print:
PDF |
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Hewson,
I, J.A.Steele, D.G. Capone, J.A. Fuhrman.
Remarkable heterogeneity in meso- and bathypelagic
bacterioplankton community composition. Limnol.
Oceanogr. In Press |
Abstract:
Coming soon
Pre-print:
PDF
on request |
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Hughes
Martiny, Jennifer B. , Brendan J.M. Bohannan,
James H. Brown, Robert Colwell, Jed A. Fuhrman,
Jessica Green, M. Claire Horner-Devine, Matthew
Kane, Jennifer Adams Krumins, Cheryl R. Kuske,
Peter Morin, Shahid Naeem, Lise
øvreås,
Anna-Louise Reysenbach, Val Smith, James Staley.
2006.
Microbial biogeography: Putting microorganisms on
the map. Nature
Reviews Microbiology 4:102-112 |
Abstract:
Coming soon
Pre-print:
PDF |
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Countway,
P.D., Caron, D.A., Gast, R.J., Savai, P.. Shifting
patterns of dominance and diversity within a coastal
protistan assemblage revealed by TRFLP, DGGE,
sequence comparison and seawater incubation.
Journal of Eukaryotic Microbiology
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Hewson
I, Steele JA, Brown MV, Fuhrman JA. Remarkable
mesoscale heterogeneity in deep sea bacterioplankton
assemblage composition.
Submitted
to Limnol Oceanogr.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Schnetzer,
A., Caron, D.A. Assessing the Impact
of Copepod Grazing on the Trophic Structure of
the Microbial Assemblage in the San
Pedro Channel ,
California .
J. Plankton Res. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A., I. Hewson, M.S. Schwalbach, J. Steele, Mark
V. Brown and S. Naeem. Annually reoccurring bacterioplankton
communities are predictable from ocean conditions. Submitted
to Nature.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Hewson,I.,
J.A. Steele, D.G. Capone, J. A. Fuhrman. Patterns of open ocean bacterioplankton
assemblage composition in the North Pacific gyre.
Submitted
to Limnol Oceanogr.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A.,
I. Hewson, M. S.
Schwalbach, M.V. Brown, J.A. Steele.
Richness-latitude gradient for marine
bacterioplankton. Submitted. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A.,
I. Hewson, M.S.
Schwalbach, J. Steele, Mark V. Brown, and S. Naeem.
Annually reoccurring bacterial communities are
predictable from ocean conditions. Submitted. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A. Community Structure: Bacteria and Archaea.
Submitted to:
Hurst,
C.J., Knudsen, G.R., McInerney, M.J., Stetzenbach,
L.D. and M.V. Walter (eds.).
Manual of Environmental
Microbiology,
Section IV, ASM Press,
Washington,
D.C. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Hewson,
I., D.G. Capone,
J. A. Steele, and J.A. Fuhrman. Influence of
Amazon and
Orinoco offshore
surface water plumes on oligotrophic
bacterioplankton diversity in the West Tropical
Atlantic. Submitted to Aquat. Microb. Ecol. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Hewson,I.,
J.A. Steele, D.G. Capone, J. A. Fuhrman.
Patterns of open ocean bacterioplankton assemblage
composition in the North Pacific gyre.
Submitted to Limnol Oceanogr. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Hewson,
Ian, and Jed A. Fuhrman. Viral impacts upon
marine bacterioplankton and sediment bacterial
assemblage structure. Submitted to J. Mar.
Biol. Asoc U.K.
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Abstract:
Coming soon
Link
to paper: Coming soon |
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Hewson
Ian, Danielle M. Winget, Kurt E.Williamson, Jed A.
Fuhrman and K. Eric Wommack. Viral
and bacterial assemblage covariance in
oligotrophic waters of the West Florida Shelf (Gulf
of Mexico). Submitted to J. Mar.
Biol. Asoc
U.K. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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»
Publications-In
Preparation
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Countway,
P.D., Caron, D.A. Annual cycle of Ostreococcus
(Prasinophyceae) abundance at the USC Microbial
Observatory (5m and Chl a maxima) using a genus-specific
qPCR assay. For submission to Applied
and Environmental Microbiology.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Caron,
D.A. R.J. Gast, Savai, P., Countway, P.D., Schnetzer,
A., Moorthi, S. Defining taxonomic units
of protists for ecological studies using DNA sequence
data.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Brown,
M.V., Schnetzer, A., Caron, D.A. Rapid
Quantification of the domoic acid producing diatom
Pseudo-nitzshia pungens by Real-Time PCR.
Harmful Algae
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Countway,
P.D., Caron, D.A.. A qPCR method for the rapid
detection and quantification of the globally distributed
haptophyte, Phaeocystis.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Caron,
D.A., Fuhrman, J., Schaffner, R., Countway,
P.D., C. Teuscher, L. Farrar. Microbial
abundance and biomass at a coastal ocean microbial
observatory. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Caron,
D.A., Countway, P.D., Schnetzer, A., Moorthi,
S. Eukaryote community diversity along
a vertical transit in the central San Pedro Channel,
western North Pacific, as indicated by small subunit
ribosomal RNA gene libraries.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Countway,
P.D., Caron, D.A., Gast, R.J., Savai, P.
Comparison of protistan diversity in deep (2500m)
vs. euphotic zone assemblages in the
Sargasso Sea and Gulf
Stream ( N. Atlantic
) |
Abstract:
Coming soon
Link
to paper: Coming soon |
|
Countway,
P.D., Caron, D.A., Savai, P. Protistan
assemblage diversity through the water column
(5-500m) in the San Pedro Channel
( Pacific Ocean ) over
a seasonal cycle |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Countway,
P.D., Vigil, P.D., Caron, D.A. Tracking
changes in the diversity of artificial protistan
assemblages using species-specific molecular signatures
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Schnetzer,
A., Countway, P.D., Savai, P., Caron, D.A.
Assessing the Impact of Copepod Grazing on
Protistan Community Composition in a coastal ocean:
A Molecular Approach.
|
Abstract:
Coming soon
Link
to paper: Coming soon |
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Caron,
D.A., Schnetzer, A., Brown, M.V. Pseudo-nitzschia
spp. and domoic acid in the San Pedro Channel
and Los Angeles Harbor areas of the southern California
Bight. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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Fuhrman,
J.A., I. Hewson, M. S. Schwalbach, M.V. Brown, J.A.
Steele.
Richness-latitude
gradient for marine bacterioplankton. |
Abstract:
Coming soon
Link
to paper: Coming soon |
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